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MESHPY

MeshPy provides Python interfaces to two well-regarded mesh generators,

  1. Triangle by J. Shewchuk http://www.cs.cmu.edu/~quake/triangle.html
  2. TetGen by Hang Si.

Both are included in the package in slightly modified versions.

TetGen

http://wias-berlin.de/software/tetgen/

If the input boundary contains no acute angle (in practice, this condition can be relaxed to no input angle smaller than 60 degree), TetGen will generate a boundary conforming Delaunay mesh.

Currently, TetGen can directly read and write data in the following file formats:

  • .off - Geomview’s polyhedral file format.
  • .ply - Plyhedral file format.
  • .stl - Stereolithography format.
  • .mesh - Medit’s mesh file format.

Install

The configure.py creates a Makefile:

simon:meshpy blyth$ ./configure.py --boost-inc-dir=/opt/local/include --boost-lib-dir=/opt/local/lib --python-exe=/opt/local/bin/python --boost-python-libname=boost_python --no-use-shipped-boost
simon:meshpy blyth$ ./configure.py --boost-inc-dir=/opt/local/include --boost-lib-dir=/opt/local/lib --python-exe=/opt/local/bin/python2.6 --boost-python-libname=boost_python --no-use-shipped-boost

Then standard approach:

make
sudo make install

Must use same python as boost_python

simon:examples blyth$ python -c "import meshpy"
simon:examples blyth$ python -c "import meshpy.tet"
Fatal Python error: Interpreter not initialized (version mismatch?)
Abort trap

Saying yes to the report dialog see the source:

Thread 0 Crashed:
0   libSystem.B.dylib               0x957659f0 __kill + 12
1   libSystem.B.dylib               0x95800bf8 abort + 84
2   org.python.python               0x010f5a50 Py_InitModule4 + 64
3   libboost_python.dylib           0x0038e970 boost::python::detail::init_module(char const*, void (*)()) + 48
4   org.python.python               0x00281b80 _PyImport_LoadDynamicModule + 192
5   org.python.python               0x0027f9c4 import_submodule + 420
6   org.python.python               0x0027fc6c load_next + 332
7   org.python.python               0x002803d4 import_module_level + 708

Probably the boost_python is built against a different python:

simon:chroma blyth$ otool -L /opt/local/lib/libboost_python.dylib
/opt/local/lib/libboost_python.dylib:
        /opt/local/lib/libboost_python.dylib (compatibility version 0.0.0, current version 0.0.0)
        /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python (compatibility version 2.6.0, current version 2.6.0)
        /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.4.0)
        /usr/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0)
        /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 111.1.7)

Examples

simon:examples blyth$ python2.6 demo.py
Mesh Points:
0 [0.0, 0.0, 0.0]
1 [2.0, 0.0, 0.0]
...
118 [12, 28, 49, 54]
119 [49, 28, 29, 54]
120 [29, 28, 12, 54]
Traceback (most recent call last):
  File "demo.py", line 23, in <module>
    mesh.write_vtk("test.vtk")
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/MeshPy-2013.1.2-py2.6-macosx-10.5-ppc.egg/meshpy/tet.py", line 104, in write_vtk
    import pyvtk
ImportError: No module named pyvtk
simon:examples blyth$